Revumenib (SNDX-5613, Revuforj) — first approved menin–KMT2A interface inhibitor
also called SNDX-5613 · Revuforj · revumenib citrate · SNDX-50613
Revumenib is a pill that pries apart the handshake between the KMT2A fusion protein and a partner protein called menin, which the leukaemia needs in order to stay immature. It became the first drug of its kind approved by the FDA, in November 2024, for children over one year old and adults whose KMT2A-rearranged leukaemia has come back.
The same thing, for a scientist
Revumenib is an orally bioavailable, selective small-molecule inhibitor of the menin–KMT2A protein–protein interaction, built on a 2,7-diazaspiro[3.5]nonane (spirocyclic) scaffold bearing an N-ethyl-N-isopropyl benzamide and an ethanesulfonamide-cyclohexyl tail (C32H47FN6O4S, free base MW 630.83; marketed as the monocitrate monohydrate). It occupies the KMT2A MBM1-binding pocket on menin, displacing both wild-type KMT2A and KMT2A fusion proteins, collapsing the HOXA9/MEIS1 self-renewal program and releasing blasts into terminal differentiation. FDA approved 2024-11-15 for R/R acute leukaemia with a KMT2A translocation in patients 1 year and older (AUGMENT-101, NCT04065399), and 2025-10-24 for R/R NPM1-mutant AML 1 year and older. It carries a boxed warning for differentiation syndrome and for QTc prolongation/Torsades de Pointes; it is a CYP3A4 substrate, and the label dose is halved when a strong CYP3A4 inhibitor is co-administered.
What it binds and how1 deeper
Revumenib is a protein–protein interaction (PPI) inhibitor, not a kinase or enzyme-active-site inhibitor. Menin has a deep central cavity that normally accepts the MBM1 motif (RWRFP, residues ~6–10) of the KMT2A N-terminus — a motif retained in every KMT2A fusion because the breakpoints all lie downstream of it. Revumenib binds that cavity and competitively blocks the KMT2A/KMT2A-fusion docking site 1. Because the fusion protein depends on menin for chromatin targeting of the HOXA9/MEIS1 locus, this single displacement is enough to shut off the self-renewal program. The FDA label states the mechanism as blocking the interaction of both wild-type KMT2A and KMT2A fusion proteins with menin 3 — a point that matters for on-target toxicity, since the drug cannot distinguish fusion from wild-type.
Why NPM1-mutant AML responds too
Cytoplasmic-mislocalised mutant NPM1 leaves a chromatin-bound residue that co-occupies the same menin–KMT2A-dependent HOXA/MEIS1 enhancers. Menin inhibition therefore also collapses the NPM1-mutant program, which is why a single agent covers two genetically distinct diseases (~10% of acute leukaemias KMT2A-r, up to 30% of AML NPM1m) 1. The NPM1m indication was approved 2025-10-24 on a 23.1% CR+CRh rate (95% CI 13.5–35.2), median duration 4.5 months 5, with the phase-2 NPM1m cohort publication reporting CR+CRh 23.4% and ORR 46.9% in 64 efficacy-evaluable adults 6.
Approval status — verified from FDA primary sources
2024-11-15 — FDA approved revumenib (Revuforj, Syndax) for "relapsed or refractory acute leukemia with a lysine methyltransferase 2A gene (KMT2A) translocation as determined by an FDA-authorized test in adult and pediatric patients 1 year and older" 23. Priority review; breakthrough and orphan designations. NDA 218944.
2025-10-24 — FDA approved a second indication: "relapsed or refractory acute myeloid leukemia (AML) with a susceptible nucleophosmin 1 (NPM1) mutation in adult and pediatric patients 1 year and older who have no satisfactory alternative treatment options" 53.
Note the age floor of 1 year in both indications. The pivotal trial enrolled from age 30 days and the youngest treated patient was 1.3 years 4, so the great majority of infant KMT2A-r ALL — diagnosed at a median of ~5 months — sits outside the label. This is the single biggest clinical gap for the infant-ALL population this lab cares about.
Efficacy — the numbers, with n
| Population | n (efficacy) | CR+CRh | ORR | Median DoR | Source |
|---|---|---|---|---|---|
| Phase 1, R/R acute leukaemia (KMT2A-r or NPM1m) | 60 | 30% | — | — | Nature 2023 1 |
| Phase 2 KMT2A-r (interim, JCO) | 57 (94 treated) | 22.8% (95% CI 12.7–35.8), p=0.0036 | 63.2% | — | JCO 2025 4 |
| Phase 2 KMT2A-r (label, longer follow-up) | 104 | 21.2% (95% CI 13.8–30.3) | — | 6.4 mo | FDA 2 |
| Phase 2 NPM1m | 64 | 23.4% (p=0.0014) | 46.9% | 4.7 mo | Blood 2025 6 |
Two caveats a reader must hold. First, CR+CRh of ~21–23% is a real but modest bar — the comparator is a population with a median OS measured in 2–3 months, and the registration null hypothesis was only 10%. Second, MRD clearance was deep in responders: 15 of 22 evaluable responders (68.2%) had no detectable residual disease 4, and 14% of transfusion-dependent patients converted to transfusion independence 2. The drug's realistic role today is a bridge to transplant, not a cure: 5 of 30 NPM1m responders (16.7%) proceeded to HSCT 6.
Dosing and the CYP3A4 trap
Twice daily, orally, in 28-day cycles 3:
| Weight | No strong CYP3A4 inhibitor | With strong CYP3A4 inhibitor |
|---|---|---|
| 40 kg or more | 270 mg BID | 160 mg BID |
| Under 40 kg | 160 mg/m² BID | 95 mg/m² BID |
Revumenib is a CYP3A4 substrate; co-administration with cobicistat raised AUC and Cmax ~2.5-fold 7. The pivotal phase 2 was in fact run with a mandated strong CYP3A4 inhibitor at 163 mg (95 mg/m² if <40 kg) every 12 h 4 — a deliberate PK-boosting strategy. For paediatric oncology this is a practical hazard: azoles (posaconazole, voriconazole) are near-universal antifungal prophylaxis in this population, so essentially every child on revumenib needs the reduced dose and QTc vigilance simultaneously.
Toxicity — boxed warning and the two dose-limiting problems
The label carries a boxed warning for (i) differentiation syndrome, which can be fatal, and (ii) QTc prolongation and Torsades de Pointes 3.
- Differentiation syndrome: 60/241 patients (25%) across the pooled safety population; grade 3–4 in 12%; fatal in 2 patients. Strikingly lineage-dependent — 33% in KMT2A-r AML, 33% in MPAL, but only 9% in ALL, and 18% in NPM1m AML 3. In the KMT2A-r registration safety set (n=135) DS was reported at 29% 8. This is mechanistically on-target — it is the drug working.
- QTc prolongation: 86/241 (36%) any grade, grade 3 15%, grade 4 2%; QTcF >500 ms in 10%; >60 ms rise from baseline in 24%; one fatal cardiac arrest and one non-sustained Torsades 3. Asymptomatic QT prolongation was the only dose-limiting toxicity in phase 1 1.
- Other events at 20% or more: raised phosphate, haemorrhage, nausea, infection, transaminase and creatinine rise, febrile neutropenia, musculoskeletal pain, raised intact PTH 3. The raised phosphate and PTH signal is interesting and under-discussed: menin is the MEN1 tumour-suppressor whose loss causes parathyroid adenomas, so perturbing menin pharmacologically in the parathyroid axis is a plausible on-target endocrine effect worth watching in children who may be on drug for years.
Resistance already reported in the clinic
On-target MEN1 binding-site mutations (M327I, G331R, G331D, T349M and others) emerge under revumenib pressure and confer resistance — see resistance-men1-interface-mutations. Crucially, these mutations are not uniformly cross-resistant across the drug class: ziftomenib retains activity against T349M and low-nanomolar potency against G331R, while M327I and G331D remain resistant to it 9. That asymmetry is the basis for a sequencing/alternation strategy (see hyp-mutation-guided-menin-inhibitor-alternation).
| chembl ID | CHEMBL4650827 |
|---|---|
| chembl salt ID | CHEMBL6068395 |
| target | gene-men1 |
| target interaction | menin–KMT2A (MBM1) protein–protein interface |
| modality | small molecule (oral, reversible PPI inhibitor) |
| chemical class | 2,7-diazaspiro[3.5]nonane spirocyclic pyrimidine-ether benzamide with ethanesulfonamide-cyclohexyl tail |
| molecular formula | C32H47FN6O4S |
| mw freebase da | 630.83 |
| alogp | 4.68 |
| ro5 violations | 1 |
| marketed form | revumenib citrate (monocitrate monohydrate), tablets |
| usan stem | -menib (inhibitor of the menin-MLL/KMT2A interaction) |
| status | FDA approved 2024-11-15 (R/R acute leukaemia with KMT2A translocation, 1 year and older); second indication approved 2025-10-24 (R/R NPM1-mutant AML, 1 year and older) |
| nda | 218944 |
| sponsor | Syndax Pharmaceuticals |
| pediatric label floor | 1 year — excludes most infant KMT2A-r ALL (median age at diagnosis ~5 months) |
dosing
{
"route": "oral",
"schedule": "every 12 hours, continuous 28-day cycles",
"ge_40kg_no_cyp3a4i_mg": 270,
"ge_40kg_with_cyp3a4i_mg": 160,
"lt_40kg_no_cyp3a4i_mg_m2": 160,
"lt_40kg_with_cyp3a4i_mg_m2": 95
}trials
[ "NCT04065399" ]
efficacy — the numbers behind the chart
[
{
"population": "phase 1 R/R KMT2A-r or NPM1m",
"n": 60,
"cr_crh_pct": 30
},
{
"population": "phase 2 KMT2A-r (JCO interim)",
"n": 57,
"cr_crh_pct": 22.8,
"orr_pct": 63.2
},
{
"population": "phase 2 KMT2A-r (label, n=104)",
"n": 104,
"cr_crh_pct": 21.2,
"median_dor_months": 6.4
},
{
"population": "phase 2 NPM1m",
"n": 64,
"cr_crh_pct": 23.4,
"orr_pct": 46.9,
"median_dor_months": 4.7
}
]boxed warning
[ "differentiation syndrome (can be fatal)", "QTc prolongation and Torsades de Pointes" ]
key ae
[ "differentiation syndrome 25% (G3-4 12%, 2 deaths)", "QTc prolongation 36% (QTcF>500ms 10%)", "febrile neutropenia", "hyperphosphataemia", "raised intact PTH", "transaminitis", "haemorrhage" ]
resistance
[ "MEN1 M327I", "MEN1 G331R", "MEN1 G331D", "MEN1 T349M", "RAS-pathway co-mutation", "non-genetic transcriptional adaptation" ]
- On-target MEN1 pocket mutations (M327I/G331R/G331D/T349M) arise under monotherapy pressure and were essentially predictable from the binding mode — monotherapy is a mutation-selection machine.
- The drug cannot distinguish fusion KMT2A from wild-type KMT2A, so every therapeutic effect is bought with inhibition of an essential normal complex; the hyperphosphataemia/raised-PTH signal may be the early clinical readout of that.
- Differentiation syndrome is the mechanism working, so it cannot be engineered away by better selectivity — only by managed ramp-up, prophylaxis and cytoreduction.
- QTc prolongation collides with the azole antifungals and CYP3A4 inhibitors that paediatric leukaemia patients almost always receive, compressing the usable therapeutic window exactly in the population of interest.
- CR+CRh of ~21% means about 4 in 5 patients do not get a deep remission; treating revumenib as a solved problem would misallocate effort away from combinations and the infant-specific questions.
- Does revumenib work in true infants (under 12 months), where the leukaemia arises in a fetal-liver-derived progenitor with a different chromatin state — and is the 1-year label floor a data gap or a real biological boundary?
- Differentiation syndrome is 33% in KMT2A-r AML but only 9% in ALL. Is the lower ALL rate evidence that the lymphoid KMT2A-r program is less menin-dependent for differentiation, and does that predict shallower responses in infant ALL?
- Given that the label mechanism explicitly includes displacement of wild-type KMT2A from menin, what is the cumulative endocrine and haematopoietic cost of years of menin blockade in a surviving child?
- E1strong confidence 4 of 5: Replicated in peer-reviewed work by more than one group.paper
Revumenib is a selective oral inhibitor of the menin–KMT2A interaction that produced a 30% CR/CRh rate in the first-in-human phase 1 trial of R/R KMT2A-rearranged or NPM1-mutant acute leukaemia, with asymptomatic QT prolongation as the only dose-limiting toxicity.
The menin inhibitor revumenib in KMT2A-rearranged or NPM1-mutant leukaemia · Issa GC, Aldoss I, DiPersio J, Cuglievan B, Stone R, Arellano M, Thirman MJ, Patel MR, Dickens DS, Shenoy S, Shukla N, Kantarjian H, Armstrong SA, Perner F, Perry JA, Rosen G, Bagley RG, Meyers ML, Ordentlich P, Gu Y, Kumar V, Smith S, McGeehan GM, Stein EM · Nature 2023What this evidence cannot show
Phase 1, single-arm, no control; efficacy population enriched for evaluable patients; heavily pretreated cohort so response durability is hard to read; sponsor (Syndax) co-authored.
Evidence that argues against this (1)
- The same trial programme's later, larger phase 2 analysis gave a lower CR+CRh rate (21–23%), indicating the phase 1 30% figure was optimistic. Issa GC et al. 2024
- E2established confidence 5 of 5: Multiple independent lines of evidence; treated as settled in the field.regulatory
FDA approved revumenib on 2024-11-15 for relapsed or refractory acute leukaemia with a KMT2A translocation in adult and paediatric patients 1 year and older, based on 104 patients with a 21.2% CR+CRh rate and 6.4-month median duration.
FDA approves revumenib for relapsed or refractory acute leukemia with a KMT2A translocation · US Food and Drug Administration · FDA Oncology (Cancer) Approval Notifications 2024What this evidence cannot show
Regulatory summary, not a peer-reviewed analysis; single-arm evidence base with no randomised comparator. CITATION TYPE CORRECTED 2026-09-20: this was stored as `type: news`. It is an FDA approval announcement on fda.gov, which is a PRIMARY regulatory record, not a news report of one. Retyped to `regulatory`. URL fetched and the page title and approval date confirmed against the claim in the same session.
Evidence that argues against this (1)
- The 21.2% CR+CRh in the approval is a property of the relapsed/refractory MONOTHERAPY setting, not of the drug. In newly diagnosed NPM1m or KMT2A-r AML in patients 60 years and older, azacitidine + venetoclax + revumenib gave a composite CR rate of 81.4% (95% CI 66.6-91.6; KMT2A-r 88.9%) and ORR 88.4%, with no patient refractory after 1-2 cycles and 37/37 evaluated patients MRD-negative by central flow. Quoting the label figure as 'revumenib's response rate' misdescribes what was measured. Zeidner JF et al. 2025
- E3established confidence 5 of 5: Multiple independent lines of evidence; treated as settled in the field.database
The current REVUFORJ label specifies both KMT2A-translocation and NPM1-mutation indications, weight-based twice-daily dosing halved with strong CYP3A4 inhibitors, and a boxed warning for differentiation syndrome (25%, grade 3-4 12%, 2 fatal) and QTc prolongation (36% any grade, QTcF >500 ms in 10%).
REVUFORJ (revumenib) tablets — full prescribing information (label, revised 2025) · Syndax Pharmaceuticals / US FDA · DailyMed / Drugs@FDA (NDA 218944) 2025What this evidence cannot show
Pooled safety population (n=241) mixes KMT2A-r and NPM1m, adults and children, so subgroup rates are approximate; label rates reflect trial-setting monitoring and may differ in routine practice.
Evidence that argues against this (2)
- The pooled label adverse-event rates do not transport to the settings in which revumenib is actually being developed. In the phase 1 azacitidine/venetoclax/revumenib combination (n=43), dosed deliberately on top of a strong CYP3A4-inhibitor azole, QTcF prolongation occurred in 19/43 (44%) - higher than the label's pooled 36% - while differentiation syndrome was lower at 8/43 (19%); neither required permanent discontinuation. A single pooled percentage for a drug given in at least three different regimens is an average of dissimilar populations. Zeidner JF et al. 2025
- QTc prolongation is NOT a menin-inhibitor class effect and must not be read as on-mechanism. The registration-enabling phase 2 of the second approved menin inhibitor, ziftomenib (KOMET-001, n=92), reports a safety profile with an explicit 'lack of clinically significant QTc prolongation', alongside differentiation syndrome at 25% (15% grade 3, no grade 4-5). Differentiation syndrome tracks the mechanism across both agents; QTc does not, so revumenib's boxed QT warning is a property of this chemotype and is potentially engineerable away, contrary to how the class is often described. Wang ES et al. 2025
- E4strong confidence 4 of 5: Replicated in peer-reviewed work by more than one group.paper
In the registration-enabling phase 2 KMT2A-r portion of AUGMENT-101, 94 patients (median age 37, range 1.3–75 years) were treated; CR+CRh was 22.8% in 57 efficacy-evaluable patients, ORR 63.2%, and 68.2% of evaluable responders had no detectable residual disease.
Menin Inhibition With Revumenib for KMT2A-Rearranged Relapsed or Refractory Acute Leukemia (AUGMENT-101) · Issa GC, Aldoss I, Thirman MJ, DiPersio J, Arellano M, Blachly JS, Mannis GN, Perl A, Dickens DS, McMahon CM, Traer E, Zwaan CM, Grove CS, Stone R, Shami PJ, Mantzaris I, Greenwood M, Shukla N, Cuglievan B, Kovacsovics T, et al. · Journal of Clinical Oncology 2024What this evidence cannot show
Interim analysis at a prespecified stop; single-arm; 22 clinical sites in 5 countries; youngest treated patient 1.3 years despite 30-day eligibility floor, so infant data are essentially absent.
Evidence that argues against this (1)
- The 22.8% CR+CRh bounds a heavily pretreated population rather than the agent. In serial patient-derived xenografts from two patients with multiply relapsed KMT2A::AFF1 ALL, late samples were markedly LESS sensitive to menin inhibition than earlier samples from the same patient, although none of the patients had ever received a menin inhibitor - so a substantial share of 'refractoriness' in an R/R registration cohort is upfront resistance acquired from prior chemotherapy. Critically, transcriptomic analysis showed sustained on-target suppression of canonical menin-inhibitor target genes in the resistant cells, so target engagement is preserved while response is lost: a pharmacodynamic readout would have called these responders. Mahdavi L et al. 2026
- E5established confidence 5 of 5: Multiple independent lines of evidence; treated as settled in the field.regulatory
FDA approved revumenib on 2025-10-24 for relapsed or refractory AML with a susceptible NPM1 mutation in patients 1 year and older, on a CR+CRh of 23.1% (95% CI 13.5–35.2) with median duration 4.5 months.
FDA approves revumenib for relapsed or refractory acute myeloid leukemia with a susceptible NPM1 mutation · US Food and Drug Administration · FDA Oncology (Cancer) Approval Notifications 2025What this evidence cannot show
Single-arm; NPM1m cohort was overwhelmingly adult (median age 63, only 1 patient under 18), so the paediatric extension of the indication is by extrapolation rather than data. CITATION TYPE CORRECTED 2026-09-20: this was stored as `type: news`. It is an FDA approval announcement on fda.gov, which is a PRIMARY regulatory record, not a news report of one. Retyped to `regulatory`. URL fetched and the page title and approval date confirmed against the claim in the same session.
Evidence that argues against this (1)
- A second, independently developed menin inhibitor produced essentially the same modest numbers in the same indication, which bounds how much of the 23.1% is attributable to revumenib specifically: in KOMET-001 phase 2 (n=92, median age 69), ziftomenib gave CR/CRh 22% (95% CI 14-32), ORR 33%, median response duration 4.6 months and median OVERALL SURVIVAL 6.6 months (95% CI 3.6-8.6). A median OS under seven months is the number that should be read beside a CR+CRh rate in the low twenties; neither approval carries a randomised comparator. Wang ES et al. 2025
- E6strong confidence 4 of 5: Replicated in peer-reviewed work by more than one group.paper
In the phase 2 NPM1-mutant cohort of AUGMENT-101 (84 treated, 64 efficacy-evaluable adults; 75% prior venetoclax), CR+CRh was 23.4% and ORR 46.9% with median CR+CRh duration 4.7 months; 5 of 30 responders went to HSCT.
Menin inhibition with revumenib for NPM1-mutated relapsed or refractory acute myeloid leukemia: the AUGMENT-101 study · Arellano ML, Thirman MJ, DiPersio JF, Heiblig M, Stein EM, Schuh AC, Zucenka A, de Botton S, Grove CS, Mannis GN, Papayannidis C, Perl AE, Issa GC, Aldoss I, et al. · Blood 2025What this evidence cannot show
Median age 63; only one patient under 18 years, so no paediatric inference; 75% had prior venetoclax, which selects for a biology that may not match frontline patients.
Evidence that argues against this (1)
- This entry's caveat - that 75% prior venetoclax exposure 'selects for a biology that may not match frontline patients' - is contradicted by the only prespecified test of it in the class. In KOMET-001 phase 2, prespecified subgroup analyses found CR/CRh comparable regardless of previous therapy, INCLUDING venetoclax, and regardless of comutation type. Prior venetoclax is therefore not established as the variable that depresses menin-inhibitor response; prior therapy INTENSITY may be (see the E4 counter-evidence), which is a different and testable claim. Wang ES et al. 2025
- E7strong confidence 4 of 5: Replicated in peer-reviewed work by more than one group.database
Revumenib AUC and Cmax increase approximately 2.5-fold with concomitant strong CYP3A4 inhibition (cobicistat), which is why the label halves the dose in that setting.
REVUFORJ (revumenib) tablets — Clinical Pharmacology (section 12.3), initial US approval 2024 · Syndax Pharmaceuticals / US FDA · Drugs@FDA label 218944s000 2024What this evidence cannot show
Drug-interaction study in a limited population; the paediatric PK of the reduced dose with azole antifungals is less well characterised.
Evidence that argues against this (1)
- Framing CYP3A4 inhibition as an interaction to be MITIGATED inverts how the programme actually uses it. The registration phase 2 dosed revumenib at 163 mg (95 mg/m2 under 40 kg) every 12 h WITH a mandated strong CYP3A4 inhibitor, and the frontline triplet study likewise dosed 113 or 163 mg q12h explicitly 'in combination with strong cytochrome P450 inhibitor azoles', identifying no maximum tolerated dose. Azole boosting is the intended dosing paradigm, not a deviation from it - which means there is essentially no azole-free clinical exposure dataset in children to compare the reduced dose against, and the practical hazard runs the other way from the label's framing: stopping the azole un-boosts the patient. Zeidner JF et al. 2025
- E8moderate confidence 3 of 5: One strong study, or several smaller consistent ones.review
In the KMT2A-r registration dataset, grade 3/4 differentiation syndrome occurred in 13% and grade 3/4 QT prolongation in 12%, with differentiation syndrome overall in 29% of 135 patients in the safety population.
Revumenib for Relapsed or Refractory Acute Leukemia With a KMT2A Translocation · Lynch EJ, Faro SJE, Lindstrom AM, Sethi NA, Wang WY, Seligson ND · Annals of Pharmacotherapy 2025What this evidence cannot show
Narrative drug review, not primary data; numbers are re-reported from trial publications and the label and differ slightly from the pooled 241-patient label figures.
Evidence that argues against this (2)
- These re-reported numbers disagree with the primary publication of the same dataset. The AUGMENT-101 phase 2 KMT2A-r paper reports grade 3 or higher differentiation syndrome in 16.0% and grade 3 or higher QTc prolongation in 13.8% of the 94 treated patients - not 13% and 12%. A narrative review's transcription of trial numbers should not be cited in place of the trial. Issa GC et al. 2025
- Independent secondary syntheses of the same trials do not agree with each other either. A scoping review covering all six clinical-stage menin inhibitors through December 2024 reports revumenib MRD-negative rates of 70-90% and puts ziftomenib differentiation syndrome in KMT2A-r patients at 30%, and records MEN1 resistance mutations emerging as early as two treatment cycles. Where two secondary sources differ, the primary trial report and the label are the only defensible citations for a rate. Dali SA et al. 2025
- E9moderate confidence 3 of 5: One strong study, or several smaller consistent ones.paper
MEN1 mutations selected by revumenib are not uniformly cross-resistant to other menin inhibitors: ziftomenib retained antileukaemic activity against T349M and low-nanomolar potency (GI50 25 nM or less) against G331R, while M327I and G331D were resistant.
Discovery and preclinical activity of the menin-KMT2A inhibitor ziftomenib in acute leukemia models · Miao H, Wu T, Purohit T, Chen D, Klossowski S, Borkin D, Clegg B, Ray J, Park S, Stevens R, Kim E, Kempinska K, Cierpicki T, Grembecka J, et al. · Blood 2026What this evidence cannot show
Engineered cell lines and crystallography, not patient data; no clinical evidence yet that switching menin inhibitors at MEN1-mutant relapse recovers response.
Evidence that argues against this (2)
- MEN1 pocket mutation is not the dominant resistance route, so a mutation-guided alternation strategy addresses a minority of failures. In multiply relapsed KMT2A::AFF1 ALL never exposed to a menin inhibitor, resistance arose with SUSTAINED on-target transcriptional response and no MEN1 pocket mutation; RAS-pathway and TP53 comutations emerged but neither was sufficient to induce resistance in vitro, and KMT2C/KMT2D loss was implicated in one patient. Switching between menin inhibitors cannot rescue a leukaemia whose resistance is downstream of, or orthogonal to, the pocket. Mahdavi L et al. 2026
- A second pocket-independent mechanism has been reported: TP53 inactivation confers resistance to revumenib in AML. PREPRINT, not peer-reviewed as of 2026-09 (PubMed returns only the bioRxiv record); cited here to bound the cross-resistance claim, not to establish the mechanism. D'Souza J et al. 2025
the menin-inhibitor class represses HDAC9 in combination with venetoclax, shown with tool compound MI-503 not with revumenib
chidamide is the HDAC inhibitor in both published menin-inhibitor combinations, though with tool compounds and never with a clinical agent
orthogonal menin + BCL-2 + hypomethylating combination is highly active in exactly the pretreated population a shared quiescent cross-resistant state would protect
heavily pretreated cohort (median 2 prior lines, 52% venetoclax-exposed) reached composite CR 71% on a revumenib triplet, bounding how much menin-inhibitor sensitivity prior therapy can destroy
proposes an intermittent alternative to the continuous q12h schedule
predicts compound-specific JUND liberation explains part of the revumenib resistance profile
menin monotherapy valued as a short-duration instrument
- ← related toBuying an already-impaired asset — what diligence would you do, and what is the biological equivalent?
argues for ex vivo sensitivity testing before committing a relapsed patient
Bearing on the menin-interface hypothesis, in its favour: the reciprocal-protein objection to targeting only the direct fusion lost its mechanism this cycle. CYP33 binds PHD3 not PHD1 (PMID 20677832), PHD1+PHD2 add-back does nothing (PMID 18676843), and MLL::Af4 alone in human CD34+ cells reproduces t(4;11) pro-B ALL with no reciprocal present (PMID 27846391).
index agent for the proposed experiment
AUGMENT-101 cohort 2D is open by HOX/MEIS mechanism
no published BH3 profiling, static or dynamic, before and after menin inhibition in KMT2A-rearranged cells — a one-week experiment underpinning several open combination trials
rapid dose-dependent death in KMT2A-rearranged ALL, slow myeloid differentiation in KMT2A-rearranged AML, measured side by side in vitro
menin inhibition induces multiple human endogenous retroviruses, interferon-stimulated genes, CIITA and MHC class II, enhancing T-cell-mediated elimination after allo-HCT
- ← confers resistance toQuiescence (G0) — the state 15 entries invoke to explain measurable residual disease, defined here for the first time
predicted, untested: a differentiating agent acts least on a G0 compartment
the one profiled patient who switched into this state on revumenib retained ENL at target loci
predicts reduced activity against the G0 compartment
menin inhibition acts as a differentiation therapy by releasing this state
the normal compartment whose menin dependency sets the therapeutic index
the specific intervention whose lineage consequence is unmeasured
the specific agent whose lineage pharmacodynamics are unmeasured in B-lineage KMT2A-r disease
class-level reasoning about this agent may not hold in infant KMT2A-rearranged ALL
Counter-evidence on 'build chemical diversity': what rescued CML from interface resistance was an ORTHOGONAL allosteric site (the ABL1 myristoyl pocket, asciminib; Wylie 2017 PMID 28329763, ASCEMBL PMID 36717654), not more chemotypes at the same pocket. Menin has one validated site and no described allosteric analogue, so the manoeuvre that saved CML is not currently available to the menin programme.
Cohort correction (Issa 2024, PMID 39121437): the registrational AUGMENT-101 phase 2 CR+CRh rate in centrally confirmed KMT2A-r was 22.8%, not the 30% phase 1 figure, with grade >=3 differentiation syndrome 16.0% and QTc prolongation 13.8%.
Sequencing lesson (Schultz 2014, PMID 24441288): at 5 years chemotherapy-plus-imatinib DFS 70% matched sibling (65%) and unrelated-donor (59%) transplant, removing transplant's advantage. The comparator for a frontline menin-inhibitor combination is this, not relapsed monotherapy.
Cross-genotype coverage argues against a partner-specific interface (Arellano 2025, PMID 40332046): the same drug works in NPM1-mutant AML, which has no fusion and no partner; CR+CRh 23.4%, median duration 4.7 months.
Program dependency, not partner interface (Bruzzese 2026, PMID 41923577): menin dependency now covers UBTF tandem duplications, which have no fusion and no partner, so menin sensitivity in NUP98-r is evidence about transcriptional state.
The APL phenocopy is shallow (Issa 2024, PMID 39121437): CR+CRh 22.8% in centrally confirmed KMT2A-r, with grade >=3 differentiation syndrome 16.0% and QTc prolongation 13.8% - the on-mechanism toxicity without the on-mechanism cure.
The positive control depends on sample treatment history (Mahdavi 2025, PMID 41027490): pretreated KMT2A::AFF1 samples resist menin inhibition with on-target repression intact, which would set the panel's dynamic range wrongly.
- ← related toKMT2A::MLLT10 (MLL-AF10), t(10;11)(p12;q23)
Prior therapy, not partner gene (Mahdavi 2025, PMID 41027490): MLLT10 and MLLT4 PDXs were menin-sensitive, while serial multiply-relapsed samples were not, with on-target repression preserved and no prior drug exposure.
- ← confers resistance toTP53 - named in 84 entries of this graph, absent from the index genome study of the disease, and four different things depending on when you look
TP53 inactivation associated with de novo revumenib resistance in an isogenic AML model (preprint); not sufficient in vitro in pretreated KMT2A::AFF1 PDX
no genomically indicated combination partner exists when menin inhibition fails in this disease
what menin inhibition selects for in the sub-1% cooperating-lesion reservoir - never measured
the rat nonclinical package reports irreversible pancreatic hyperplasia at about 2x the human AUC
- ← related toIntact PTH rises in 34% of patients on revumenib, and hyperparathyroidism is on the label
intact PTH increased in 34%; hyperparathyroidism listed under Endocrine disorders on the label
label section 8.4 mandates monitoring bone growth in paediatric patients on the basis of irreversible rat physeal closure at 2x human AUC
irreversible hyperplasia in testes, mammary gland and pancreas in rats at 2x human AUC
PMR 4730-1 under FDCA 505(o)(3), at least 3 years of treatment per patient, final report 2028-05
a pocket ligand has no structural basis on which to discriminate MLL1 from JunD; displacement of JunD by any approved inhibitor has never been published
- ← related toFAERS shows no endocrine signal for either menin inhibitor - and proves it could not have
904 FAERS reports; differentiation syndrome and QTc heavily over-represented, no endocrine term present
UBTF-TD AML is a menin-inhibitor-responsive subtype with acquired resistance as the problem
KMT2A* lacks the menin-binding motif entirely, so it is drug-resistant by construction and is not monitored in any trial
matched-occupancy arm compares menin inhibition with degradation
companion compound active in menin-inhibitor-resistant cells
menin inhibition acts through targeted PRC1.1-dependent silencing
menin inhibition attenuates CDK6 levels and synergises with abemaciclib in MLL1-rearranged AML
class effect inferred; the published class I experiments used VTP50469, MI-503 and bleximenib, not revumenib
- ← confers resistance toRaising MHC class I is not a free good: the same molecule is the inhibitory ligand that holds NK cells off, and in this fusion family it is an in vivo leukaemia dependency
class effect; no revumenib-specific class I or NK experiment exists
the intervention that would decouple the marker from the genotype; zero published records intersect NG2 with any menin inhibitor
Counter-evidence (Abraham 2025, PMID 40459635, PMC12205252): the only published economic evaluation of revumenib enters drug acquisition at $36,867 per 28-day cycle (RED BOOK WAC, 2024 USD, US commercial payer) -- exactly two $19,750 bottles pro-rated 28/30, i.e. the CYP3A4-inhibitor-reduced 160 mg BID adult dose -- and a median treatment duration of 2.39 months, so realised adult drug spend is ~$95,000 per course, not the ~$474,000 label-minimum figure.
one asset active across KMT2A-r and NPM1-mutant leukemia
orphan exclusivity codes on NDA 218944
designation and approval pathway actually used
- ← testsThe 'infant ALL' PDX panel with four KMT2A::AFF1 models — one of which the full text calls adult
related menin inhibitor SNDX-50469 tested in three infant MLL-r ALL PDXs with ctDNA readout
proposed as a post-translational route to the same MEIS1 output, motivated by menin-inhibitor resistance
- ← confers resistance toPCGF1 — the PRC1.1 scaffold whose LOSS causes menin-inhibitor resistance, so it is a restraint on the leukaemia rather than a dependency of it
loss of PCGF1 (or BCOR) reactivates noncanonical menin targets including MYC and confers menin-inhibitor resistance in KMT2A-rearranged AML
- ← confers resistance toPRC1.1 — the complex this graph has been leaning on, now enumerated subunit by subunit, and the enumeration changes the conclusion
loss of PCGF1 or BCOR reactivates bivalent noncanonical menin targets including MYC and confers menin-inhibitor resistance
Revumenib carries a separate approval for relapsed or refractory NPM1-mutant AML.
- ← related toRNA-binding proteins set how much KMT2A::AFF1 protein a cell makes from its own fusion transcript
Menin inhibitors act on fusion function, not fusion abundance; dose control is an unmonitored axis
The clinical menin inhibitor this combination result bears on, though the experiment used MI-503
- ← related toThe same pocket suppresses JUND: menin inhibition's unmeasured endocrine liability in infants
approved from age 1, so the exposed population is children with decades of life ahead and no endocrine surveillance in the reported toxicity tables
a menin inhibitor whose pocket may or may not be the ERalpha contact
the potency confound and the experiment that would settle it: MI-2-2 at 10 uM is first-generation, a revumenib arm in the same lines would separate weak inhibition from a real ceiling
co-listed with Calaspargase Pegol in two trials, one from a minimum age of 1 month; and QTc - the recognised liability for this class - IS an itemised endpoint where homocysteine is not
- proposed by →Eytan Stein (MSKCC), Ghayas Issa (MD Anderson) and the clinical menin-inhibitor investigator network
ran the first-in-human and registration trials
- part of →Syndax Pharmaceuticals — revumenib (SNDX-5613), the only menin inhibitor licensed down to infancy
sponsor; the only menin inhibitor with a paediatric indication
- ← confers resistance toMEN1 drug-interface mutations — the first proof that a chromatin drug can drive Darwinian escape in patients
escape mutations in the exact pocket the drug occupies
- ← confers resistance toAdaptive, non-genetic resistance — the leukemia keeps the fusion and rewires how it is maintained
escape without a mutation, which no sequencing assay will catch
- ← confers resistance toSignalling co-mutations (RAS pathway, FLT3-ITD, WT1) under menin-inhibitor pressure
a co-existing signalling addiction the interface drug does not touch
- ← confers resistance toMYC reactivation through PRC1.1 loss — a named, druggable bypass out of menin dependence
a bypass programme that keeps the cell going once the fusion program is blocked
the registration trial that put a menin inhibitor on the market
pairing the interface drug with an orthogonal mechanism to pre-empt escape
breaks the tether, evicting the fusion from chromatin
approved in relapsed or refractory KMT2A-rearranged acute leukemia from 1 year of age
- ← confers resistance toLineage switch in KMT2A-rearranged leukemia — the same clone changes what kind of blood cell it is
changing lineage is an escape route from any lineage-directed therapy
- ← confers resistance toKinase/PI3K/RAS pathway activation — the only common co-lesion class in KMT2A-r leukemia, and it is mostly subclonal
a co-existing signalling addiction the interface drug does not touch
- ← confers resistance toThe KMT2A-r DNA methylation signature — focal hypermethylation, no global hypomethylation, and a hypomethylating agent that did not help
a second, menin-independent silencing layer
where do blasts actually go when the block is released
the drug whose resistance mutations are numbered this way
revumenib stop reasons and class toxicities
NCT07052994 and NCT07498465 withdrawn
hyperparathyroidism on the label
menin class stop reasons (q198)
occupies the MBM1 pocket (PDB 7UJ4, 8E90)
target protein
menin-MLL interaction compounds inhibit menin-MLL2 as well as menin-MLL1 and menin-fusion; therapeutic contribution concluded minor in mouse MLL-AF9
predicts <10-fold selectivity between the menin-KMT2A and menin-KMT2B interfaces
- ← confers resistance toKMT2D (MLL2/MLL4) - the gene named in this graph's menin-resistance entry, written here for the first time
KMT2D downregulation proposed as resistance in one of two multiply relapsed KMT2A::AFF1 patients - neither of whom had received a menin inhibitor
- ← related toBiomea Fusion — icovamenib (BMF-219): the covalent menin inhibitor that left oncology for diabetes
Counter-evidence (NCT05153330 WhyStopped): the registry does state why COVALENT-101 closed -- 'no longer pursuing oncology indications ... No safety concerns or efficacy observations led to this study closure' -- so the covalent menin inhibitor's exit is a portfolio decision and is not evidence against menin inhibition in KMT2A-rearranged disease
Counter-evidence (NCT05761171): AALL2121's menin-displacement CUT&RUN and paired RNA-seq are protocol-specified, its primary MRD endpoint excludes under-6-month infants, and revumenib-pretreated patients are ineligible -- the cohort supplies no post-menin resistance material
preclinical origin (VTP-50469) and co-authorship of the first-in-human trial NCT04065399
- ← related toEytan Stein (MSKCC), Ghayas Issa (MD Anderson) and the clinical menin-inhibitor investigator network
corresponding authors of the first-in-human revumenib trial (NCT04065399)
- ← related toSyndax Pharmaceuticals — revumenib (SNDX-5613), the only menin inhibitor licensed down to infancy
sponsor and developer of revumenib (SNDX-5613)
runs AALL2121 (NCT05761171), revumenib plus chemotherapy in relapsed/refractory KMT2A-rearranged infant leukaemia from one month of age
LEDGF chromatin binding falls under SNDX-5613 by CUT&RUN
the drug whose failure defines the proposed indication
the drug whose effect on fusion protein fate has never been measured
predicts the drug class is a partial degrader of the fusion
compartment-dependent signalling is a general warning for pharmacodynamic readouts chosen on one pathway
does marrow stroma protect KMT2A-rearranged cells from revumenib? No primary study exists
- ← confers resistance toWhich step is rate-limiting, and what compensates when you block it — the bite-back map for the causal chain
Counter-evidence (Mahdavi 2025, PMID 41027490): resistance in multiply pretreated KMT2A::AFF1 ALL arose with sustained on-target drug effect and without prior menin-inhibitor exposure - a failure mode outside the rate-limiting-step model.
Counter-evidence (Ozyerli-Goknar 2026, PMID 42371796): menin-MLL inhibitors DO disrupt menin-JUND, shown by quantitative mass spectrometry in MLLr leukaemic cells. The liberated JUND gains chromatin occupancy, upregulates targets and contributes to therapy resistance - so the first-order consequence of JunD displacement is leukaemic escape, not an endocrine lesion.
- ← related toHypothesis: the PTH rise on menin inhibitors is on-target and exposure-dependent, not renal
Counter-evidence (Issa 2025, PMID 39121437): grade >=3 differentiation syndrome in 16.0% and febrile neutropenia in 37.2% of 94 AUGMENT-101 patients. Corticosteroids, sepsis and volume shifts move PTH by ordinary physiology; no prediction in this hypothesis carries those covariates.
Design counter (Issa 2025, PMID 39121437): differentiation syndrome at grade >=3 in 16.0% is managed with systemic corticosteroids, which move glucose, IGF-1, bone ALP and height velocity - four of this panel's readouts. Covariate list added to data.covariates_required.
does saturating menin-pocket occupancy displace FANCD2?
- ← confers resistance toA menin inhibitor may release RELA from menin's restraint — and released RELA is what keeps MLL fusions on chromatin. Prior 0.20
proposed adaptive non-genetic resistance route via liberated canonical NF-kB
- ← related toThe other half of the islet story: losing menin also costs the beta cell its identity and raises glucagon
Bite-back: dedifferentiation is invisible to every proliferation-based safety readout in the nonclinical package and to every endpoint in the clinical programme
Embryo-fetal mortality, malformations and altered fetal growth at ~0.5x human AUC, in a drug approved from 1 year of age with 25 infants under 2 in the safety population
guanine-nucleotide blockade sensitises MLLr AML to menin inhibition
predicts and observes sensitisation to menin inhibition
the best-supported version of the proposal is combination with a menin inhibitor
in the VTP-50469 preclinical line panel; three of eight PDXs in the same study are t(11;19) MLL-ENL
t(11;19) is 13/57 of the efficacy population, the largest named partner group
three of eight PDXs in the pivotal VTP-50469 study are t(11;19) MLL-ENL
largest named partner group in AUGMENT-101, 21/94
- ← related toFlow-cytometric MRD: the fastest readout, and the one a lineage switch walks straight out of
differentiation and lineage switch both disturb a phenotype-based MRD readout
menin inhibition decouples circulating blasts from plasma tumour DNA in PDX
differentiation reported alongside residual-disease clearance in the same trials
predicts additivity with a clinical menin inhibitor at sub-maximal doses
AUGMENT-101 enrolled no named septin translocation
menin-inhibitor arm
revumenib arm of the all-oral SAVE triplet
- related to →Counted absence: no menin-inhibitor trial has ever reported a response RATE in NUP98-rearranged patients
REVUFORJ label contains no occurrence of NUP98
- ← confers resistance toEvicting the fusion is not enough: PRC1.1 has to arrive, and losing it causes menin-inhibitor resistance in vivo
PRC1.1 loss leaves target genes active despite eviction
the approved menin inhibitor's registration cohort contained two evaluable KMT2A::AFF1 patients
no published response rate by 3-prime partner for revumenib
- ← confers resistance toWhat could refute the menin-interface bet, restated after the provenance audit: three tests, none of which is about menin binding
biomarker and mechanism implications for an approved menin inhibitor
NEVER TESTED: zero PubMed records link this fusion to menin or menin inhibitors, although it retains the menin-binding motifs by position
menin-inhibitor trials enrol on KMT2A rearrangement; a FISH-negative patient is ineligible for a drug targeting the module their fusion retains
eligibility is written on KMT2A rearrangement, not partner; phase 2 cohorts 2A and 2B specify no partner
160 mg twice daily from day 6 of azacitidine-venetoclax, dose-adjusted for posaconazole, then continued as maintenance
160 mg twice daily after progression on 13 cycles of azacitidine-venetoclax; produced disease stabilisation rather than remission at four months
approved chemical matter against this pocket (7UJ4 co-crystal, 1.96 A)
aggregate response data exists at scale; patient-level data does not
- ← related toPKA phosphorylates menin at Ser487 and pulls it off chromatin - a kinase input on the drug target itself
a kinase route to the same endpoint a menin inhibitor produces, untested in leukaemia
menin inhibition induces PRC1.1-dependent deposition at a SUBSET of MLL-fusion targets
- ← confers resistance toUSP7 - the enzyme that holds PRC1.1 together, and the only pharmacological handle on this complex that exists today
predicted antagonism: USP7 inhibition removes the PRC1.1 machinery a menin inhibitor silences through; untested as of 2026-09-20
the target of the analogy: does menin-interface disruption do the same at the same element?
the intervention whose chromatin action is being predicted
any MYC-based pharmacodynamic biomarker for this drug rests on an unassigned mechanism
the drug's transcriptional output is partly executed by the host cell's PRC1.1
- ← confers resistance toThere is no selective PRC1 catalytic inhibitor - the entire chemistry is one 2013 tool compound and its analogues, and it hits both paralogues by design
the only available PRC1 chemistry moves the target in the direction of the documented menin-inhibitor resistance lesion
- ← related toTrithorax against Polycomb at HOXA: the textbook antagonism, and the two ways this disease breaks it
no menin-inhibitor study reports an H3K27me3 measurement, in any system
menin inhibition removes fusion occupancy from the JMJD1C locus - one of the small named loss set
class effect: a menin inhibitor removes ATF4 transcriptional output without lowering ATF4 mRNA past 1 log2; measured for VTP-50469 and MI-2-2, not for revumenib itself
the alias CHOP is a chemotherapy regimen: 16,893 PubMed records against DDIT3's 973, and all 12 fusion-scoped CHOP hits are regimen papers, not gene papers
UNCHECKED SAFETY LEAD: a 20-fold fall in an anti-hypocalcaemic secreted factor in a marrow-resident tumour; no pharmacovigilance query on hypocalcaemia or hypophosphataemia under a menin inhibitor has been run
class effect: SOCS2 is MENIN-INHIBITOR-SELECTIVE (VTP-50469 -1.06, EPZ5676 +0.04). Measured for VTP-50469 and MI-2-2, not for revumenib itself
class-level adaptive-resistance candidate: a menin inhibitor raises a druggable survival kinase 1.99 log2 while a DOT1L inhibitor does not. Measured for VTP-50469, not revumenib
class effect: VTP-50469 330 nM, RS4;11 d7, -3.24 log2; revumenib itself was not the compound tested
- ← confers resistance toALDH1L2 (Q3SY69) - the second-largest fall in the serine/one-carbon panel (-3.40), named nowhere in this graph, zero of 1,258 DepMap lines require it, and a tumour SUPPRESSOR where it has been studied
bite-back: ALDH1L2 limits ROS and its loss is tumour-promoting in pancreas, so a 3.40 log2 fall may be a liability of the drug rather than part of its mechanism
fixed-dose menin arm; VTP-50469 or revumenib
bite-back: menin delivers SUV39H1 to chromatin, and removing menin from a promoter removes SUV39H1 from it - so a menin inhibitor is predicted to lower menin-delivered H3K9me3, which has never been measured under any menin inhibitor
proposes an INTRINSIC, transcriptional resistance route invisible to MEN1 sequencing: a self-renewal programme defined as independent of the Hoxa/Meis axis the drug's effect is read through
the unmeasured behaviour of the fusion under this drug class: relocation versus removal
VTP50469 is the preclinical analogue of revumenib; this is the residual fusion occupancy under it at 500 nM for 48 h
the hypothesis is about the chromatin action of the menin-inhibitor class, measured with VTP50469
the proposal uses revumenib or VTP-50469 at two exposures with three biological replicates
VTP-50469 is the tool compound of the revumenib series and this is its founding occupancy dataset (PMID 31821784)
GSE127507 is the founding occupancy deposit of the VTP-50469 / revumenib series and it carries no recoverable scale factor
at 330 nM VTP-50469 to match the deposited series, plus a revumenib arm for clinical relevance
H3K79me2 at the fusion's own sites (0.70) and DOT1L (0.20) both move far more than the MLL1 ChIP the field uses as a readout (1.04 over floor), so either is a better pharmacodynamic biomarker
its promoter bin is where MLL1-N-reactive share rises most under the menin inhibitor VTP-50469, the tool compound of this drug class
the axis joining this drug class's leukaemia benefit to its paediatric growth-plate liability; RUNX2[tiab] AND revumenib[tiab] returns 0
revumenib partially reverses the transcriptional consequences of degrading ZMYND11 in mouse cortical neurons, which is why this analogy generates a menin-inhibitor prediction in a fusion with no KMT2A rearrangement
predicts activity in a leukaemia with no KMT2A rearrangement, through de-restrained wild-type KMT2A rather than through a fusion
the biomarker consequence for the clinical menin inhibitors: a disease resistant through PRC1.1 loss would show normal H3K79me2 pharmacodynamics, so the readout reports engagement in the genotype where the drug fails
VTP-50469 is the tool-compound congener of the clinical menin inhibitor
VTP-50469 is the tool congener; no clinical menin inhibitor has this measurement
occupancy-based pharmacodynamics would read full engagement in this genotype
the endocrine arm a menin inhibitor would be expected to disrupt; never measured under drug
the clinical molecule the design would dose
the drug whose label carries the parathyroid signal
none of the 22 records was measured under a menin inhibitor and none maps an interface, so the drug question is unposable from these data
the class effect measured with the tool compound VTP-50469
exposure-time dependence of the class effect, measured with VTP-50469
the class effect, measured with VTP-50469 in the founding paper's own series
a candidate pharmacodynamic statistic for the menin-inhibitor class
a polycomb-deficient cell is evicted normally and silenced less
VTP50469 is the tool menin inhibitor in one of the three conditions scored; revumenib is its clinical successor
VTP-50469, the preclinical analogue of revumenib, clears menin from 19/19 target peaks - the pharmacodynamic this drug class is named for
makes menin occupancy at pre-specified loci a candidate pharmacodynamic endpoint - and names why it would be blind to MEN1-pocket resistance
the preclinical tool compound behind nearly every chromatin claim attributed to the clinical drug - and no head-to-head chromatin comparison exists
differentiation syndrome reported as the on-target hallmark in the first-in-human phase 1
the pairing this hypothesis implies: an antigen-directed agent for the bulk, a menin inhibitor for the immature fraction
PHARMACODYNAMIC CAUTION: menin displacement measures pocket engagement, not oncoprotein eviction. In this deposit a menin inhibitor at full engagement leaves 51.7-76.9% of the fusion's own chromatin sites occupied, while degrading the fusion barely moves menin genome-wide.
the drug class whose persistence the hypothesis explains
designed as a correlative add-on to an existing menin-inhibitor trial
The same interface is the target of the approved menin inhibitor, so the biomarker caution transfers
- ← related toThe menin inhibitor removes three-quarters of the fusion from its own promoters, replicated in two batches
the clinical agent's resistance mutations act by preventing the same eviction of menin and MLL1 from chromatin
chromatin eviction is the mechanistically correct endpoint for this class, which makes measuring it badly consequential
the only infant menin occupancy data are under a menin inhibitor in a different fusion
pharmacodynamic gene lists are lineage-state-dependent
the compound the paper names for this patient
the compound, named in the paper's abstract for this patient
the exposure the sample was drawn under
the perturbation
ENL's residual occupancy at myeloid-program peaks is a candidate resistance route to menin inhibition
the drug whose mechanism makes the experiment non-discriminating
the drug arm
the drug whose pharmacodynamic readout is at issue
148752/152985 profiled under a menin inhibitor; the paper names revumenib for this lineage-switching patient
the menin inhibitor the case was treated with
the oncoprotein is undetectable on chromatin in the post-menin-inhibitor aliquot
a permission the drug removes, not the dial it sets
the oncoprotein goes to zero only in the menin-inhibited pair
- ← related toMenin CUT&RUN in an IRX1-high KMT2A::AFF1 blast — the missing track in every public deposit
decides whether a menin inhibitor has a target to engage in this subgroup
152985 was sampled during revumenib and calls zero promoters under every interval set
a stored diagnostic target map would be used to interpret menin-inhibitor pharmacodynamics
a drug-naive blast whose occupancy profile matches a revumenib-exposed one
- ← confers resistance toHypothesis: the HOXA-negative, IRX1-negative KMT2A-rearranged blast is a low-oncoprotein-dosage state, not a state whose oncoprotein has been redirected to another programme
predicts less chromatin-bound oncoprotein to displace in a double-negative blast
bears on patient selection for menin inhibitors on a GMP-like signature
the two comparator samples are menin-inhibitor treated, which makes their absence uninformative
the Stage 2 menin-inhibitor arm - no published experiment combines an AKAP95 perturbation with any menin or DOT1L inhibitor
never combined with any AKAP95 perturbation; the epistasis question is one plate and points in opposite therapeutic directions
the menin-MLL interface is the worked precedent for drugging a peptide-in-groove contact in this disease, and the scale comparison against it is the point
the drug class whose effect on the niche axis is unmeasured
the drug whose effect on the axis the hypothesis predicts and nobody has measured
revumenib contacts menin E366 at 2.9 A and V371 at 4.3 A in 7UJ4
contacts the acidic shelf and Val371; no repair readout has ever been measured under it
23 menin residues within 4.5 A in 7UJ4
arm 2
the phase 1 that enrolled KMT2A-rearranged OR NPM1-mutant leukaemia and reported 30% CR/CRh is the counter-example to CRM1-addressed HOXA being menin-independent
the four-arm design needs a fifth arm: 'Phantom Peaks' at ~3,000 active promoters (PMID 26117547) and hyper-ChIPable highly expressed loci (PMID 24173036) are exactly where HOXA/HOXB/FOXC1 sit, and the prescribed control is chromatin from XPO1-depleted (or XPO1-C528S) cells, not a second antibody
PREDICTED ON-TARGET LIABILITY, not a measured one: menin is required for Th17 differentiation and maintenance in normal T cells through the same read-write function the drug blocks, and no published menin-inhibitor trial reports Th17, IL-17 or RORgt
A subnuclear distribution would be a third pharmacodynamic readout independent of chromatin occupancy, which cannot separate eviction from menin degradation
predicted de-repression of LXR target genes; no lipid panel published in this drug class
unmeasured anti-androgen liability predicted by the menin-MLL requirement for AR signalling
the approved agent in which the prediction is testable on banked material
the agent whose banked samples make this cheap
the agent whose HR effect is unmeasured
the menin-inhibitor lipid absence this mechanism rested on is gone: MI-463 and intestinal Men1 deletion limit lipid absorption through LXR-beta (PMID 42579365), and MI-2's cholesterol phenotype is an off-target lanosterol-synthase effect largely independent of menin (PMID 30923116)
LXR-beta, graded weak here because one 2015 paper never discussed it, is the receptor a 2026 menin-inhibitor study puts at the centre of an in-vivo intestinal lipid mechanism with MI-463 (PMID 42579365)
Combined in the SAVE all-oral triplet with venetoclax: CRc 71% in 42 R/R AML patients aged >=12, 40% KMT2A-rearranged; reported synergy with menin inhibition in ALL lines.
Both act by releasing a differentiation block and both cause differentiation syndrome (enasidenib 7% grade 3-4; SAVE triplet 10%). A combination stacks the class toxicity and may be non-additive.
the clinical compound's preclinical analogue VTP-50469 leaves the fusion on chromatin at most sites
enumerates every chromatin measurement made under this drug and its class
bounds what is known about this drug's effect on fusion localisation
the deposited data use the preclinical analogue of this drug
revumenib at 100 nM and 1 microM against a DMSO and a MEN1-degron arm
dose ladder in wild-type and interface-mutant MEN1 backgrounds
the perturbation under which relocation is proposed
applies to every pharmacodynamic inference made about this drug class
the approved agent whose pharmacodynamic logic this risk concerns
the only closed solid-tumour menin trial (NCT05731947) was terminated for pre-defined efficacy signals not being met
- ← confers resistance toThe predictable clinical error this beat exists to prevent: a menin inhibitor given for a KMT2A-rearranged sarcoma because of the gene name
no menin-binding motif in the fusion, so no target - predicted from coordinates, never measured
- ← confers resistance toAbout one KMT2A-rearranged patient in twenty has no direct fusion at all - only the reciprocal one
Predicted non-response on architectural grounds; never tested, and no eligibility criterion identifies these patients.
Bounded absence: no study of this drug class records reciprocal fusion status.
- ← confers resistance toJUND liberation — the drug's mechanism of action and one of its mechanisms of resistance are the same event
JUND liberated from the drugged pocket gains chromatin occupancy and contributes to resistance
- ← confers resistance toTP53 inactivation and the apoptotic threshold — the drug still switches the program off, and the cell still does not die
TP53 inactivation confers de novo resistance despite preserved on-target transcriptional effect
- ← confers resistance toThe MLL3/4-UTX switch fails to throw — menin inhibition kills by turning something ON, and cells that cannot turn it on survive
loss of the MLL3/4-UTX activating arm leaves canonical target suppression intact and the cell alive
- ← confers resistance toLineage switch as a menin-inhibitor escape route — documented in a patient on revumenib, and invisible to every resistance-mutation screen
a KMT2A-rearranged leukaemia lineage-switched during revumenib treatment with menin and oncoprotein undetectable
- ← confers resistance toENL stays after the fusion leaves — an epigenetic lesion that outlives the protein that made it
target loci stayed occupied and active after menin and the oncoprotein became undetectable
- ← confers resistance toThe menin-inhibitor-resistant state has its own address: SMARCA4, BRD4 and CREBBP, with no MEN1 mutation anywhere
laboratory-derived menin-inhibitor-resistant state with no MEN1 mutation
- ← confers resistance toSwitching menin inhibitors: four substitutions defeat all of them, three defeat only some, and the map now exists
shared-class substitutions defeat revumenib and the other profiled inhibitors alike
Tier 2 dose-response in LOUCY and MEGAL, with a KMT2A::AFF1 line for exposure calibration
acts on link 2; CR+CRh 22.8% is the chain's clinical endpoint
response depth across a PRC1.1 capacity range
reads out what the menin inhibitor does to the fusion protein itself, which no published study measures
the SD70 + MI-503 synergy argument inherits menin-inhibitor resistance that arises without menin-inhibitor exposure in pretreated KMT2A::AFF1 samples (Mahdavi 2025)
menin inhibitor class; the preprint does not name a single agent at abstract level
- ← co-occurs withFHD-286 - the dual BRG1/BRM inhibitor that carries every SWI/SNF therapeutic claim in this disease, with a minimum enrolment age of 16
synergistic preclinically, including against derived menin-inhibitor resistance and menin M327I
synergistic with FHD-286 preclinically; no combination protocol exists
Counter-evidence (Wang 2025, PMID 40997296): the ziftomenib registration phase 2 (n=92) reports an explicit lack of clinically significant QTc prolongation with differentiation syndrome at 25% -- so DS tracks the mechanism across the class and QTc does not; the revumenib boxed QT warning is chemotype-specific, not on-mechanism
Counter-evidence (Zeidner 2025, PMID 40504618): azacitidine+venetoclax+revumenib in newly diagnosed NPM1m/KMT2Ar AML gave composite CR 81.4% and ORR 88.4% with 37/37 MRD-negative -- the ~21% CR+CRh in the label is a property of the R/R monotherapy setting, not of the drug
- related to →MEN1 drug-interface mutations — the first proof that a chromatin drug can drive Darwinian escape in patients
Counter-evidence (Mahdavi 2026, PMID 41027490): multiply relapsed KMT2A::AFF1 ALL was already menin-inhibitor resistant WITHOUT any menin-inhibitor exposure, with canonical target genes still suppressed and no MEN1 pocket mutation -- pocket mutation is a minority route and mutation-guided drug alternation addresses only that minority
Counter-evidence (Scheidegger 2026, PMID 42085603): RAS-pathway mutations occur in 43% of AML across 1750 COG patients and in KMT2A-r AML predict lower CR, poor EFS/OS and early relapse -- RAS status matters clinically even where it is insufficient to confer menin-inhibitor resistance in vitro; menin+MEK reduced PDX burden without improving overall survival
- ← related toBET bromodomain inhibition in KMT2A-rearranged leukemia — spectacular preclinically, stalled clinically
Counter-evidence (Berthon 2016, PMID 27063977): OTX015 in 41 patients with acute leukaemia reached 160 mg/day before any DLT yet only 3 achieved CR/CRi lasting 2-5 months, with cumulative low-grade toxicity setting the dose -- DepMap common-essentiality predicted neither the toxicity nor the efficacy of clinical BET inhibition
Counter-evidence (ClinicalTrials.gov v2 API, NCT04065399, retrieved 2026-09-19): the prespecified primary outcomes are DLTs, TEAEs, PK and the phase 2 CR+CRh rate -- neither overall nor event-free survival appears, so both FDA approvals of revumenib rest on a trial that never prespecified a survival endpoint
- ← supportsPinometostat (EPZ-5676) — the DOT1L inhibitor, and the most instructive failure in this field
preclinical synergy in primary KMT2A-rearranged ALL; no clinical DOT1L asset exists to test it
mechanism-matched combination partner; in phase 3 in NCT06652438 and NCT07007312
parallel differentiation mechanism; combination may be redundant rather than synergistic and has not been published
menin inhibition induces CIITA/MHC-II via HERV derepression and enhances graft-versus-leukaemia in KMT2A-r AML xenografts
the agent in four of the five registered post-transplant maintenance studies
clinical menin inhibitor exposure arm at a target-engaging concentration
the clinical arm is two AUGMENT-101 patients, one NPM1c and one MLL-rearranged
Reciprocal status is not recorded in any menin-inhibitor eligibility criterion, and reciprocal-positive patients carry an oncoprotein the drug cannot reach.
The cohorts with banked t(4;11) material are menin-inhibitor cohorts; duration of response is the priority endpoint.