Born with it: congenital KMT2A::MLLT1-type AML, a subdural haemorrhage that began before birth, and death on day four
also called congenital AML t(11;19)(q23;p13.3) case · neonatal leukaemia subdural haematoma case
A baby girl was delivered at 36 weeks because her heart rate was dropping, and was born already ill: a purple rash all over, a hugely enlarged liver and spleen, unequal pupils and a weak left side. Her white cell count was 188,000, her blood would not clot, and scans showed a large bleed inside her skull that had probably started before she was born; after her family were told what the options were, they chose comfort care and she died on the fourth day of her life.
The same thing, for a scientist
A female infant was delivered at 36 weeks by Caesarean section for fetal decelerations and intubated shortly after birth for respiratory distress. Examination showed a diffuse non-blanching bluish-red macular rash with palpable areas and petechiae, marked hepatosplenomegaly, a slightly full fontanelle, anisocoria (right 4 mm minimally reactive, left 2 mm trace reactive) and reduced spontaneous movement and tone in the left arm and leg. WBC was 188,000/cumm with 70% blasts, Hb 9.2 g/dL, platelets 110,000/cumm, PT 65.1 s, PTT 58.9 s, INR 7.7, LDH above 76,000 IU and urate 9.1 mg/dL. Blasts were monoblastic/promonocytic, partly MPO-positive and strongly NBE-positive; flow cytometry showed a mixed phenotype and a diagnosis of AML with monocytic differentiation. Karyotype was 46,XX,t(11;19)(q23;p13.3) in 20/20 metaphases with KMT2A rearrangement confirmed by FISH and interpreted as a KMT2A-MLLT1 (ENL) fusion, plus a ~533 kb interstitial deletion at 19p13.11 indicating a more complex rearrangement; constitutional karyotype was normal. Head ultrasound at 15 hours showed a 5.8 x 3.9 cm right middle cranial fossa collection and MRI at 21 hours confirmed a mixed-age subdural haematoma with uncal herniation and multifocal diffusion restriction. Marrow biopsy was deferred because of coagulopathy. Placental pathology showed abnormal fetal myeloid cells. After exchange transfusions, rasburicase and a subdural tap through the coronal suture, the family redirected care to comfort measures and the infant died on day of life 4. Post-mortem showed leukaemic involvement of essentially every organ sampled. [E1]
How it began
Before birth. The pregnancy had been uncomplicated until 34 weeks, when pre-term labour began and then resolved; delivery was at 36 weeks by Caesarean section for fetal decelerations after spontaneous labour. Apgar scores were 5 and 5 at one and five minutes, and the infant was intubated shortly after birth for respiratory distress 1.
The first examination records the whole of it:
- a diffuse, non-blanching, bluish-red macular rash with some palpable areas, and multiple petechiae - the two skin findings of
concept-leukemia-cutis-infantandconcept-bruising-petechiae-thrombocytopeniaat the same time on the same baby; - a full, somewhat distended abdomen with marked hepatosplenomegaly (
concept-hepatosplenomegaly-infant-leukemia); - a slightly full anterior fontanelle;
- unequal pupils, 4 mm and minimally reactive on the right, 2 mm and trace reactive on the left;
- decreased spontaneous movement and reduced tone throughout the left arm and leg.
The last three are not leukaemia signs. They are the signs of a mass inside the skull.
What was found1 deeper
The blood. WBC 188,000/cumm with 70% blasts (concept-hyperleukocytosis-emergency), haemoglobin 9.2 g/dL, platelets 110,000/cumm. The clotting was the striking part: prothrombin time 65.1 s, partial thromboplastin time 58.9 s, INR 7.7. Tumour lysis was already established at birth, with LDH above 76,000 IU (reference 130-700) and urate 9.1 mg/dL 1.
The cells. Blasts on the smear were mostly monoblasts or promonocytes; a subset was myeloperoxidase-positive and there was strong diffuse alpha-naphthyl butyrate esterase positivity - the monocytic pattern. Flow cytometry found a mixed phenotype, with 62% of events in the myeloid gate co-expressing CD56, CD64, HLA-DR, TdT and partial CD5, and 19% in a monocytic gate co-expressing HLA-DR, CD13, CD14, CD56 and CD64. The diagnosis given was AML with monocytic differentiation 1.
The chromosomes. 46,XX,t(11;19)(q23;p13.3) in 20 of 20 metaphases, with KMT2A rearrangement confirmed by FISH and no PML::RARA, RUNX1::RUNX1T1 or CBFB rearrangement (concept-cytogenetics-karyotype-kmt2a, concept-fish-split-signal-kmt2a). Mitogen-stimulated lymphocyte culture showed no germline chromosomal abnormality, so the translocation was somatic. The authors interpret t(11;19)(q23;p13.3) as a KMT2A to ENL/MLLT1 fusion; microarray additionally showed a ~533 kb interstitial deletion at 19p13.11, implying a more complex rearrangement than the karyotype suggests.
The proof it started in utero. Placental pathology showed abnormal fetal myeloid cells, with no other histopathological abnormality and no evidence of a TORCH agent. Fetal blood in the placenta contained immature myeloid cells consistent with AML blasts 1.
The head. Ultrasound at 15 hours of life showed a 5.8 x 3.9 cm mixed-density lesion in the right middle cranial fossa; MRI at 21 hours confirmed a mixed-intensity subdural haematoma with a fluid-fluid level containing both acute and subacute blood, smaller left temporal and right cerebellar subdural collections, uncal herniation, multifocal diffusion restriction consistent with ischaemia from vascular compression and microvascular emboli, entrapment of the left lateral ventricle and diffuse leptomeningeal enhancement. The authors conclude the haemorrhage likely occurred in utero.
Marrow biopsy was deferred because of the coagulopathy. The diagnosis was made on blood, cytochemistry, flow and cytogenetics alone.
Naming the fusion honestly
The report calls the product of t(11;19)(q23;p13.3) a fusion of KMT2A with ENL/MLLT1, which is the standard assignment for that breakpoint: 19p13.3 carries MLLT1, while 19p13.1 carries ELL. It does not report an RT-PCR or sequencing confirmation of the transcript, and the additional 19p13.11 deletion means the rearrangement is more complex than a simple reciprocal translocation. This entry therefore records the partner as MLLT1 by cytogenetic assignment, not by molecular confirmation - the distinction concept-molecular-confirmation-fusion-transcript exists to make.
What was done and what happened
She had serial exchange transfusions for the hyperleukocytosis and rasburicase for tumour lysis. Once the clotting had been corrected far enough to make it safe, the large right middle cranial fossa collection was tapped percutaneously through a patent coronal suture - the only intervention judged safe; craniotomy, drain placement and subdural shunting were discussed and not pursued 1.
A multidisciplinary group of neonatology, neurosurgery, haematology-oncology and neurology then counselled the parents on the options, which were palliative neurosurgical intervention or aggressive chemotherapy against an overall grim prognosis. The family chose comfort measures, and she died on the fourth day of her life.
Post-mortem confirmed the imaging and found more: the haematoma extended into the subarachnoid space and onto the parenchymal surface, with midline shift, transtentorial herniation and multifocal infarction, particularly in the head of the left caudate. Malignant cells were present intravascularly, perivascularly and in the leptomeninges. Outside the CNS, blasts diffusely involved the dermis in the rash-affected skin, the hepatic sinusoids, the splenic red pulp, the pleural surfaces, the submucosa of the upper airway, the lung interstitium around bronchovascular bundles, the full thickness of the oesophagus, stomach and small and large bowel, and sections of kidney, heart, thymus, pancreas, pituitary, lymph nodes, adrenals, uterus and ovaries. The marrow was near 100% cellular and almost entirely blasts.
After she died, the report states, verbal consent was obtained from her parents for public discussion of her case.
Why this case is in the graph
This is the outcome that the category entries describe in percentages. The clinical arm records that congenital leukaemia carries survival of roughly 23-26% in two large studies. This is one of the other 74%, and what it looked like was four days.
What it teaches that a category entry cannot:
- The disease can be complete at birth. Not early, not aggressive - complete. Blasts were in the placenta, in every organ sampled at post-mortem, and had already caused an intracranial bleed before delivery. There was never a window in which a targeted agent could have been given to a healthy child.
- What kills first is not the leukaemia. It was the coagulopathy, with an INR of 7.7, and the mass effect of the resulting haemorrhage. Nothing aimed at the menin-KMT2A interface addresses either.
- Even the diagnostic pathway bends. Marrow biopsy, the standard first step, was deferred because taking it was unsafe.
- The decision recorded is the family's. The report does not describe treatment failure. It describes a choice made after counselling, and then a death. Recording that honestly is part of what a patient-story arm is for.
It also instantiates the deep-tissue tropism that the graph theorises about elsewhere: skin, meninges, gut wall, lung interstitium, pituitary, ovaries. Whatever migratory programme KMT2A-rearranged monoblasts run, this post-mortem is what it does when nothing stops it.
| age at dx | at birth (congenital); delivered at 36 weeks gestation |
|---|---|
| sex as reported | female |
| fusion | fusion-kmt2a-mllt1 |
| fusion assignment | provisional - cytogenetic assignment from t(11;19)(q23;p13.3) interpreted by the authors as KMT2A to ENL/MLLT1; no transcript-level confirmation reported |
| karyotype | 46,XX,t(11;19)(q23;p13.3) in 20/20 metaphases; KMT2A rearrangement confirmed by FISH; additional ~533 kb interstitial deletion at 19p13.11; normal constitutional karyotype |
| immunophenotype | mixed phenotype; 62% of events in a myeloid gate co-expressing CD56, CD64, HLA-DR, TdT and partial CD5; 19% in a monocytic gate co-expressing HLA-DR, CD13, CD14, CD56, CD64; blasts partly MPO-positive and strongly alpha-naphthyl butyrate esterase positive |
| cns status | 5.8 x 3.9 cm right middle cranial fossa subdural haematoma of mixed age with smaller left temporal and right cerebellar collections, uncal herniation, multifocal diffusion restriction and diffuse leptomeningeal enhancement; post-mortem showed intravascular, perivascular and leptomeningeal leukaemic infiltration |
| in utero evidence | placental pathology showed abnormal fetal myeloid cells; fetal blood contained immature myeloid cells consistent with AML blasts; no TORCH agent |
| course | serial exchange transfusions for hyperleukocytosis; rasburicase for tumour lysis; percutaneous subdural tap through a patent coronal suture once coagulation permitted; craniotomy, drain and shunt discussed and not pursued; marrow biopsy deferred because of coagulopathy; multidisciplinary counselling of the parents on palliative neurosurgery versus aggressive chemotherapy |
| outcome | died on day of life 4 after the family redirected care to comfort measures; post-mortem showed leukaemic involvement of CNS, skin, liver, spleen, pleura, upper airway, lung, oesophagus, stomach, small and large bowel, kidney, heart, thymus, pancreas, pituitary, lymph nodes, adrenals, uterus and ovaries, with a near 100% cellular marrow of blasts |
| source type | case report |
| consent note | Published peer-reviewed case report. The report states that after the patient died, verbal consent was obtained from the parents for public discussion of the case, and notes that the case had previously been presented as a neonatology case review without the full cytogenetic and pathological detail. This entry records only what the publication discloses; the treating institution and the mother's age are deliberately omitted. |
| privacy review | No detail added, inferred or reconstructed beyond the publication. The death is recorded as reported, neither softened nor dramatised, and no narrative has been written about the child. |
presentation
[ "delivered at 36 weeks by Caesarean section for fetal decelerations; Apgar 5 and 5", "intubated shortly after birth for respiratory distress", "diffuse non-blanching bluish-red macular rash with some palpable areas, plus multiple petechiae", "marked hepatosplenomegaly with a full, distended abdomen", "slightly full anterior fontanelle", "anisocoria: right pupil 4 mm minimally reactive, left 2 mm trace reactive", "decreased spontaneous movement and tone in the left arm and leg" ]
labs at presentation
{
"wbc_per_cumm": 188000,
"blasts_pct_peripheral": 70,
"haemoglobin_g_per_dL": 9.2,
"platelets_per_cumm": 110000,
"prothrombin_time_s": 65.1,
"partial_thromboplastin_time_s": 58.9,
"inr": 7.7,
"ldh_IU": "greater than 76,000 (reference 130-700)",
"urate_mg_per_dL": 9.1
}- In congenital leukaemia the lethal events are mechanical and haemostatic and arrive in the first hours. A therapy that acts through differentiation or transcriptional reprogramming works on a timescale of days to weeks, which in this case did not exist.
- Differentiation-inducing agents in a child with 188,000/cumm monoblasts and an INR of 7.7 carry a specific hazard: differentiation syndrome and worsening coagulopathy in a patient with an existing intracranial bleed.
- Post-mortem showed leukaemic infiltration of endocrine tissue including the pituitary and adrenals. Any agent that also perturbs those tissues - and menin inhibitors are under scrutiny for exactly that - would be acting on organs already involved by disease.
- The graph's therapeutic entries are implicitly written for a patient who survives long enough to be treated. This case is the reminder that a meaningful fraction of the disease's victims never enter that population, and so never appear in a trial denominator.
- The coagulopathy, not the blast count, was the proximate cause of death. What drives the INR to 7.7 at birth in congenital monoblastic leukaemia - disseminated intravascular coagulation from tissue factor on monoblasts, hepatic infiltration, or both - and is it preventable in the first hours?
- Post-mortem found blasts in pituitary, adrenals, ovaries and gut wall. Is that tropism a property of KMT2A-rearranged monoblasts, or simply what any leukaemia looks like with no treatment at all? A comparison against non-KMT2A congenital leukaemia autopsies would settle it and, as far as this entry's search found, has not been done.
- Abnormal fetal myeloid cells were present in the placenta. How early is the clone detectable in placental or cord blood in congenital leukaemia, and would antenatal detection change anything that can currently be offered?
- If a menin inhibitor were safe in a neonate, what would it be asked to do here? The child had a fixed intracranial mass lesion and an INR of 7.7 on day one. The entry cannot answer whether any systemic agent could have worked fast enough.
- E1moderate confidence 3 of 5: One strong study, or several smaller consistent ones.paper
A female infant delivered at 36 weeks for fetal decelerations presented at birth with a diffuse non-blanching bluish-red macular rash with palpable areas and petechiae, marked hepatosplenomegaly, anisocoria and left-sided weakness; WBC was 188,000/cumm with 70% blasts, Hb 9.2 g/dL, platelets 110,000/cumm, PT 65.1 s, PTT 58.9 s, INR 7.7, LDH above 76,000 IU and urate 9.1 mg/dL; blasts were monoblastic with partial MPO and strong NBE positivity and a mixed immunophenotype, diagnosed as AML with monocytic differentiation; karyotype was 46,XX,t(11;19)(q23;p13.3) in 20/20 metaphases with KMT2A rearrangement on FISH, interpreted as a KMT2A-ENL/MLLT1 fusion, with a ~533 kb 19p13.11 deletion and a normal constitutional karyotype; placental pathology showed abnormal fetal myeloid cells; head ultrasound at 15 hours and MRI at 21 hours showed a 5.8 x 3.9 cm right middle cranial fossa subdural haematoma of mixed age with uncal herniation and multifocal diffusion restriction; after exchange transfusions, rasburicase and a percutaneous subdural tap the family redirected care to comfort measures and the infant died on day of life 4, with post-mortem showing leukaemic involvement of the CNS, skin, liver, spleen, lung, gut, kidney, heart, thymus, pancreas, pituitary, lymph nodes, adrenals, uterus and ovaries.
Congenital Acute Myeloid Leukemia with Unique Translocation t(11;19)(q23;p13.3) · Yarbrough CK, Bandt SK, Hurth K, et al. · Cureus 2015What this evidence cannot show
Full text read (PubMed Central, PMC4523210), not abstract only. A single case report: it fixes nothing about frequency, and publication bias is unusually strong here because the authors state that only one previous congenital leukaemia case with intraparenchymal haemorrhage and a fatal outcome had been found in the literature - the case was written up because it is rare. The fusion partner is a cytogenetic assignment from t(11;19)(q23;p13.3); no RT-PCR or sequencing confirmation of a KMT2A::MLLT1 transcript is reported, and the additional 19p13.11 deletion indicates the rearrangement is more complex than the karyotype implies, so the partner is recorded here as provisional. Marrow biopsy was deferred, so the marrow burden at presentation is known only from post-mortem. This is a neurosurgical report whose purpose is to argue that intervention should be considered; its framing of the outcome is shaped by that aim. This entry omits the treating institution and the mother's age given in the paper as identifying detail that adds nothing clinically.
Evidence that argues against this (2)
- Against reading this course as the rule: the same literature includes congenital KMT2A-rearranged leukaemia that was treated successfully into a durable remission, and the report cites others with long-term survival or even spontaneous remission, so 'congenital' does not by itself determine the outcome. source 2020
- Against attributing the adverse outcome to leukaemia cutis or to skin involvement: a systematic review of the world literature concluded that the natural history of congenital leukaemia is not altered by leukaemia cutis, so the rash here is a sign, not a prognostic factor. source 1993
- related to →KMT2A::MLLT1 (MLL-ENL), t(11;19)(q23;p13.3)
t(11;19)(q23;p13.3) assigned cytogenetically to KMT2A-ENL/MLLT1; no transcript confirmation reported
congenital AML with monocytic differentiation and mixed phenotype
diffuse non-blanching bluish-red macular rash with palpable areas; post-mortem showed diffuse dermal leukaemic infiltration
marked hepatosplenomegaly at birth; post-mortem showed diffuse sinusoidal and red-pulp infiltration
WBC 188,000/cumm with 70% blasts, managed with serial exchange transfusions
subdural haemorrhage probably begun in utero, with leptomeningeal, perivascular and intravascular blasts at post-mortem
multiple petechiae with INR 7.7 and a large intracranial haemorrhage
46,XX,t(11;19)(q23;p13.3) in 20/20 metaphases with a normal constitutional karyotype
KMT2A rearrangement confirmed by FISH with 5' on chromosome 11 and 3' on chromosome 19
a case where the transcript was never confirmed, so the partner assignment rests on band position alone
- related to →Skin first, blood later: a three-day-old referred for purple spots, with KMT2A::MLLT3 neonatal ALL
two neonates with KMT2A-rearranged leukaemia and skin involvement and opposite outcomes: death on day 4 versus alive at 2 years after transplant
- ← related toThree pairs of twins who both got leukaemia: the patients who proved the fusion happens before birth
independent evidence of prenatal origin in a single child: leukaemic myeloid cells in the placenta and fetal blood at birth
the same t(11;19) on a karyotype report, seventy-three years apart in age and two different fusions: ELL at 19p13.1 and MLLT1 at 19p13.3